PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G070600.1
Common NameB456_004G070600, LOC105790620
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 231aa    MW: 26266.4 Da    PI: 5.0193
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G070600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-18100150356
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr+++ +g ++AeIrdp+ ng  +r++lg++ t+e+Aa a+++ + k++g+
  Gorai.004G070600.1 100 YRGVRRRP-WGTYAAEIRDPKRNG--ARIWLGTYETPEGAALAYDRTAFKMRGA 150
                         9*******.**********98776..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.3E-3399163IPR001471AP2/ERF domain
PROSITE profilePS5103222.95899157IPR001471AP2/ERF domain
CDDcd000184.26E-2999159No hitNo description
Gene3DG3DSA:3.30.730.104.3E-3099158IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-21100158IPR016177DNA-binding domain
PfamPF008472.3E-12100149IPR001471AP2/ERF domain
PRINTSPR003677.1E-12100111IPR001471AP2/ERF domain
PRINTSPR003677.1E-12139159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MYCDSASDFD LSLLDSIRQY LLEDDFDTIP GQVVENLRKN ELHDDAINVD QWINFDQLFD  60
AAEETDAVNN ASFPSFEVSF QMESTAAVPK PHAPPKMFNY RGVRRRPWGT YAAEIRDPKR  120
NGARIWLGTY ETPEGAALAY DRTAFKMRGA KAKLNFPHLI GSDQVEPVRV SSKKRRSAEP  180
PSSCSWAQWP SSPWDDGTPK SKRRRSEIKT ESEVDMYQLM PTEFCQTLIC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2799164570ATERF1
3gcc_A2e-2799164570ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5864362e-65JX586436.1 Gossypium hirsutum clone NBRI_GE20263 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473780.11e-174PREDICTED: ethylene-responsive transcription factor 2-like
TrEMBLA0A0D2MUS81e-174A0A0D2MUS8_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-41ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]